Structural Similarities for the Entities in PDB 1Q16

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Respiratory nitrate reductase 1 alpha chain protein | Length: 1247

No structure alignment results are available for 1Q16.A explicitly.

It is represented by chain 3EGW.A which has more than 95% sequence identity.

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View how chain 1Q16.A compares with the representative chain PDP:3EGWAa. Select a comparison method:


Entity #2 | Chains B

Description: Respiratory nitrate reductase 1 beta chain protein | Length: 512

No structure alignment results are available for 1Q16.B explicitly.

It is represented by chain 3EGW.B which has more than 95% sequence identity.

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View how chain 1Q16.B compares with the representative chain PDP:3EGWBa. Select a comparison method:


Entity #3 | Chains C

Description: Respiratory nitrate reductase 1 gamma chain protein | Length: 225

No structure alignment results are available for 1Q16.C explicitly.

It is represented by chain 3EGW.C which has more than 95% sequence identity.

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View how chain 1Q16.C compares with the representative chain PDP:3EGWCa. Select a comparison method:


References