Structural Similarities for the Entities in PDB 1PVO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains G,H,J,K,L

Description: 5'-R(P*UP*C)-3' rna | Length: 2

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains A,B,C,D,E,F

Description: Transcription termination factor rho protein | Length: 419

No structure alignment results are available for 1PVO.A, 1PVO.B, 1PVO.C, 1PVO.D, 1PVO.E, 1PVO.F explicitly.

These chains are represented by chain 5JJI.A which is 100% sequence identical.

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View how chain 1PVO.F compares with the representative chain PDP:5JJIAa. Select a comparison method:


References