Structural Similarities for the Entities in PDB 1PV4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-25-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains G,H,J,K,L

Description: 5'-D(P*CP*C)-3' dna | Length: 2

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B,C,D,E,F

Description: Transcription termination factor rho protein | Length: 419

No structure alignment results are available for 1PV4.A, 1PV4.B, 1PV4.C, 1PV4.D, 1PV4.E, 1PV4.F explicitly.

These chains are represented by chain 3L0O.A which has more than 50% sequence identity.

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View how chain 1PV4.F compares with the representative chain PDP:3L0OAa. Select a comparison method: