Structural Similarities for the Entities in PDB 1PRT

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,G

Description: PERTUSSIS TOXIN (SUBUNIT S1) protein | Length: 234

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Entity #2 | Chains B,H

Description: PERTUSSIS TOXIN (SUBUNIT S2) protein | Length: 196

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Entity #3 | Chains C,I

Description: PERTUSSIS TOXIN (SUBUNIT S3) protein | Length: 196

No structure alignment results are available for 1PRT.C, 1PRT.I explicitly.

These chains are represented by chain 1PRT.b which has more than 70% sequence identity.

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View how chain 1PRT.I compares with the representative chain d1prtb1. Select a comparison method:


Entity #4 | Chains D,E,J,K

Description: PERTUSSIS TOXIN (SUBUNIT S4) protein | Length: 110

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Entity #5 | Chains F,L

Description: PERTUSSIS TOXIN (SUBUNIT S5) protein | Length: 98

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References