Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.
Structural Similarities for the Entities in PDB 1PN8
The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2]. To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment  is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser .
Entity #1: Chains: D
This entity is not a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.
Entity #2: Chains: O
No structure alignment results are available for 1PN8.O explicitly.
It is represented by chain XXXX.null which has more than 70% sequence identity.
Entity #3: Chains: L
No structure alignment results are available for 1PN8.L explicitly.
It is represented by chain 3EGV.B which has more than 50% sequence identity.
Calculate pairwise sequence or structure alignments.
A detailed description of the procedure for the all vs. all alignments is available.