1PN8

Coordinates of S12, L11 proteins and E-site tRNA from 70S crystal structure separately fitted into the Cryo-EM map of E.coli 70S.EF-G.GDPNP complex. The atomic coordinates originally from the E-site tRNA were fitted in the position of the hybrid P/E-site tRNA.


Structural Similarities for the Entities in PDB 1PN8

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: May-24-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains D

Description: E-tRNA rna | Length: 68

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains O

Description: 30S ribosomal protein S12 protein | Length: 124

No structure alignment results are available for 1PN8.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains L

Description: 50S ribosomal protein L11 protein | Length: 133

No structure alignment results are available for 1PN8.L explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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References