Structural Similarities for the Entities in PDB 1PMA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,D,E,F,G,H,I,J,K,L,M,N,O

Description: PROTEASOME protein | Length: 233

No structure alignment results are available for 1PMA.A, 1PMA.C, 1PMA.D, 1PMA.E, 1PMA.F, 1PMA.G, 1PMA.H, 1PMA.I, 1PMA.J, 1PMA.K, 1PMA.L, 1PMA.M, 1PMA.N, 1PMA.O explicitly.

These chains are represented by chain 5LE5.A which has more than 40% sequence identity.

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View how chain 1PMA.O compares with the representative chain PDP:5LE5Aa. Select a comparison method:


Entity #2 | Chains 1,2,B,P,Q,R,S,T,U,V,W,X,Y,Z

Description: PROTEASOME protein | Length: 211

No structure alignment results are available for 1PMA.1, 1PMA.2, 1PMA.B, 1PMA.P, 1PMA.Q, 1PMA.R, 1PMA.S, 1PMA.T, 1PMA.U, 1PMA.V, 1PMA.W, 1PMA.X, 1PMA.Y, 1PMA.Z explicitly.

These chains are represented by chain 1YAR.h which is 100% sequence identical.

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View how chain 1PMA.Z compares with the representative chain d1yarh1. Select a comparison method:


References