Strategy to design inhibitors: Structure of a complex of Proteinase K with a designed octapeptide inhibitor N-Ac-Pro-Ala-Pro-Phe-DAla-Ala-Ala-Ala-NH2 at 2.5A resolution

Structural Similarities for the Entities in PDB 1PFG

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-18-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Proteinase K protein | Length: 279

No structure alignment results are available for 1PFG.A explicitly.

It is represented by chain 1GCI.a which has more than 40% sequence identity.

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View how chain 1PFG.A compares with the representative chain d1gcia_. Select a comparison method:

Entity #2 | Chains B

Description: N-Ac-PAPFAAAA-NH2 protein | Length: 10

This entity is too short to be considered for the all vs. all structure alignments.