Structural Similarities for the Entities in PDB 1PDF

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-20-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R

Description: Baseplate structural protein Gp11 protein | Length: 219

No structure alignment results are available for 1PDF.A, 1PDF.B, 1PDF.C, 1PDF.D, 1PDF.E, 1PDF.F, 1PDF.G, 1PDF.H, 1PDF.I, 1PDF.J, 1PDF.K, 1PDF.L, 1PDF.M, 1PDF.N, 1PDF.O, 1PDF.P, 1PDF.Q, 1PDF.R explicitly.

These chains are represented by chain 1EL6.a which is 100% sequence identical.

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View how chain 1PDF.R compares with the representative chain d1el6a_. Select a comparison method:


References