Structural Similarities for the Entities in PDB 1PAR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E

Description: DNA (5'-D(*TP*AP*TP*AP*GP*TP*AP*GP*AP*GP*TP*GP*CP*TP*TP*CP*T P*AP*TP*CP*AP*T)- 3') dna | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains F

Description: DNA (5'-D(*AP*AP*TP*GP*AP*TP*AP*GP*AP*AP*GP*CP*AP*CP*TP*CP*T P*AP*CP*TP*AP*T)- 3') dna | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,B,C,D

Description: PROTEIN (ARC REPRESSOR) protein | Length: 53

No structure alignment results are available for 1PAR.A, 1PAR.B, 1PAR.C, 1PAR.D explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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View how chain 1PAR.D compares with the representative chain xxxx. Select a comparison method:


References