Structural Similarities for the Entities in PDB 1P9U

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F

Description: putative coronavirus nsp2 (3CL-PRO) protein | Length: 302

No structure alignment results are available for 1P9U.A, 1P9U.B, 1P9U.C, 1P9U.D, 1P9U.E, 1P9U.F explicitly.

These chains are represented by chain 2YNA.A which has more than 40% sequence identity.

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View how chain 1P9U.F compares with the representative chain PDP:2YNAAa. Select a comparison method:


Entity #2 | Chains G,H

Description: PHQ-VNSTLQ-CHLOROMETHYLKETONE INHIBITOR protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.


References