Structural Similarities for the Entities in PDB 1P84

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Ubiquinol-cytochrome C reductase complex core protein I protein | Length: 431

No structure alignment results are available for 1P84.A explicitly.

It is represented by chain 3CX5.a which is 100% sequence identical.

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Entity #10 | Chains J

Description: Heavy Chain (Vh) Of Fv-Fragment protein | Length: 127

No structure alignment results are available for 1P84.J explicitly.

It is represented by chain 4UNU.A which has more than 40% sequence identity.

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Entity #11 | Chains K

Description: Light Chain (Vl) Of Fv-Fragment protein | Length: 107

No structure alignment results are available for 1P84.K explicitly.

It is represented by chain 4UNU.A which has more than 50% sequence identity.

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Entity #2 | Chains B

Description: Ubiquinol-cytochrome C reductase complex core protein 2 protein | Length: 352

No structure alignment results are available for 1P84.B explicitly.

It is represented by chain 3CX5.b which is 100% sequence identical.

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Entity #3 | Chains C

Description: cytochrome b protein | Length: 385

No structure alignment results are available for 1P84.C explicitly.

It is represented by chain 3CX5.c which has more than 95% sequence identity.

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Entity #4 | Chains D

Description: Cytochrome c1, heme protein protein | Length: 246

No structure alignment results are available for 1P84.D explicitly.

It is represented by chain 3CX5.d which is 100% sequence identical.

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Entity #5 | Chains E

Description: Ubiquinol-cytochrome C reductase iron-sulfur subunit protein | Length: 185

No structure alignment results are available for 1P84.E explicitly.

It is represented by chain 3CX5.e which is 100% sequence identical.

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Entity #6 | Chains F

Description: Ubiquinol-cytochrome C reductase complex 17 kDa protein protein | Length: 74

No structure alignment results are available for 1P84.F explicitly.

It is represented by chain 1KB9.f which is 100% sequence identical.

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Entity #7 | Chains G

Description: Ubiquinol-cytochrome C reductase complex 14 kDa protein protein | Length: 125

No structure alignment results are available for 1P84.G explicitly.

It is represented by chain 3CX5.g which is 100% sequence identical.

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Entity #8 | Chains H

Description: Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein | Length: 93

No structure alignment results are available for 1P84.H explicitly.

It is represented by chain 3CX5.h which is 100% sequence identical.

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Entity #9 | Chains I

Description: Ubiquinol-cytochrome C reductase complex 7.3 kDa protein protein | Length: 55

No structure alignment results are available for 1P84.I explicitly.

It is represented by chain 1KB9.i which is 100% sequence identical.

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References