Structural Similarities for the Entities in PDB 1P51

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-11-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains E,F,H,I

Description: 5'-D(*GP*CP*AP*TP*AP*TP*CP*AP*AP*TP*TP*TP*GP*TP*TP*GP*CP*AP*T)-3' dna | Length: 19

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B,C,D

Description: DNA-binding protein HU protein | Length: 94

No structure alignment results are available for 1P51.A, 1P51.B, 1P51.C, 1P51.D explicitly.

These chains are represented by chain 4P3V.A which has more than 50% sequence identity.

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View how chain 1P51.D compares with the representative chain PDP:4P3VAa. Select a comparison method: