Structural Similarities for the Entities in PDB 1OXK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,I,K

Description: Ypd1p protein | Length: 166

No structure alignment results are available for 1OXK.A, 1OXK.C, 1OXK.E, 1OXK.G, 1OXK.I, 1OXK.K explicitly.

These chains are represented by chain 2R25.a which is 100% sequence identical.

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View how chain 1OXK.K compares with the representative chain d2r25a1. Select a comparison method:


Entity #2 | Chains B,D,F,H,J,L

Description: SLN1 protein | Length: 134

No structure alignment results are available for 1OXK.B, 1OXK.D, 1OXK.F, 1OXK.H, 1OXK.J, 1OXK.L explicitly.

These chains are represented by chain 2R25.b which is 100% sequence identical.

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View how chain 1OXK.L compares with the representative chain d2r25b1. Select a comparison method:


References