Structural Similarities for the Entities in PDB 1OKV

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Aug-23-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: CELL DIVISION PROTEIN KINASE 2 protein | Length: 298

No structure alignment results are available for 1OKV.A, 1OKV.C explicitly.

These chains are represented by chain 4FKL.A which is 100% sequence identical.

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View how chain 1OKV.C compares with the representative chain PDP:4FKLAa. Select a comparison method:


Entity #2 | Chains B,D

Description: CYCLIN A2 protein | Length: 260

No structure alignment results are available for 1OKV.B, 1OKV.D explicitly.

These chains are represented by chain 2CCH.b which is 100% sequence identical.

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View how chain 1OKV.D compares with the representative chain d2cchb1. Select a comparison method:


Entity #3 | Chains E,F

Description: H-ARG-ARG-LEU-ILE-PHE-NH2 protein | Length: 6

This entity is too short to be considered for the all vs. all structure alignments.


References