Structural Similarities for the Entities in PDB 1OCZ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Dec-31-1969

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,N

Description: CYTOCHROME C OXIDASE protein | Length: 514

No structure alignment results are available for 1OCZ.A, 1OCZ.N explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #10 | Chains J,W

Description: CYTOCHROME C OXIDASE protein | Length: 59

No structure alignment results are available for 1OCZ.J, 1OCZ.W explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #11 | Chains K,X

Description: CYTOCHROME C OXIDASE protein | Length: 56

No structure alignment results are available for 1OCZ.K, 1OCZ.X explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #12 | Chains L,Y

Description: CYTOCHROME C OXIDASE protein | Length: 47

No structure alignment results are available for 1OCZ.L, 1OCZ.Y explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #13 | Chains M,Z

Description: CYTOCHROME C OXIDASE protein | Length: 46

No structure alignment results are available for 1OCZ.M, 1OCZ.Z explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B,O

Description: CYTOCHROME C OXIDASE protein | Length: 227

No structure alignment results are available for 1OCZ.B, 1OCZ.O explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #3 | Chains C,P

Description: CYTOCHROME C OXIDASE protein | Length: 261

No structure alignment results are available for 1OCZ.C, 1OCZ.P explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #4 | Chains D,Q

Description: CYTOCHROME C OXIDASE protein | Length: 147

No structure alignment results are available for 1OCZ.D, 1OCZ.Q explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #5 | Chains E,R

Description: CYTOCHROME C OXIDASE protein | Length: 109

No structure alignment results are available for 1OCZ.E, 1OCZ.R explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #6 | Chains F,S

Description: CYTOCHROME C OXIDASE protein | Length: 98

No structure alignment results are available for 1OCZ.F, 1OCZ.S explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #7 | Chains G,T

Description: CYTOCHROME C OXIDASE protein | Length: 84

No structure alignment results are available for 1OCZ.G, 1OCZ.T explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #8 | Chains H,U

Description: CYTOCHROME C OXIDASE protein | Length: 85

No structure alignment results are available for 1OCZ.H, 1OCZ.U explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains I,V

Description: CYTOCHROME C OXIDASE protein | Length: 73

No structure alignment results are available for 1OCZ.I, 1OCZ.V explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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References