Structural Similarities for the Entities in PDB 1OCR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,N

Description: CYTOCHROME C OXIDASE protein | Length: 514

No structure alignment results are available for 1OCR.A, 1OCR.N explicitly.

These chains are represented by chain 5B1A.A which is 100% sequence identical.

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View how chain 1OCR.N compares with the representative chain PDP:5B1AAa. Select a comparison method:


Entity #10 | Chains J,W

Description: CYTOCHROME C OXIDASE protein | Length: 59

No structure alignment results are available for 1OCR.J, 1OCR.W explicitly.

These chains are represented by chain 5B1A.J which is 100% sequence identical.

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View how chain 1OCR.W compares with the representative chain PDP:5B1AJ_. Select a comparison method:


Entity #11 | Chains K,X

Description: CYTOCHROME C OXIDASE protein | Length: 56

No structure alignment results are available for 1OCR.K, 1OCR.X explicitly.

These chains are represented by chain 5B1A.K which is 100% sequence identical.

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View how chain 1OCR.X compares with the representative chain PDP:5B1AK_. Select a comparison method:


Entity #12 | Chains L,Y

Description: CYTOCHROME C OXIDASE protein | Length: 47

No structure alignment results are available for 1OCR.L, 1OCR.Y explicitly.

These chains are represented by chain 5B1A.L which is 100% sequence identical.

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View how chain 1OCR.Y compares with the representative chain PDP:5B1AL_. Select a comparison method:


Entity #13 | Chains M,Z

Description: CYTOCHROME C OXIDASE protein | Length: 46

No structure alignment results are available for 1OCR.M, 1OCR.Z explicitly.

These chains are represented by chain 5B1A.M which is 100% sequence identical.

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Entity #2 | Chains B,O

Description: CYTOCHROME C OXIDASE protein | Length: 227

No structure alignment results are available for 1OCR.B, 1OCR.O explicitly.

These chains are represented by chain 5B1A.B which is 100% sequence identical.

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Entity #3 | Chains C,P

Description: CYTOCHROME C OXIDASE protein | Length: 261

No structure alignment results are available for 1OCR.C, 1OCR.P explicitly.

These chains are represented by chain 5B1A.C which has more than 95% sequence identity.

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Entity #4 | Chains D,Q

Description: CYTOCHROME C OXIDASE protein | Length: 147

No structure alignment results are available for 1OCR.D, 1OCR.Q explicitly.

These chains are represented by chain 5B1A.D which is 100% sequence identical.

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Entity #5 | Chains E,R

Description: CYTOCHROME C OXIDASE protein | Length: 109

No structure alignment results are available for 1OCR.E, 1OCR.R explicitly.

These chains are represented by chain 5B1A.E which is 100% sequence identical.

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View how chain 1OCR.R compares with the representative chain PDP:5B1AEa. Select a comparison method:


Entity #6 | Chains F,S

Description: CYTOCHROME C OXIDASE protein | Length: 98

No structure alignment results are available for 1OCR.F, 1OCR.S explicitly.

These chains are represented by chain 5B1A.F which is 100% sequence identical.

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Entity #7 | Chains G,T

Description: CYTOCHROME C OXIDASE protein | Length: 84

No structure alignment results are available for 1OCR.G, 1OCR.T explicitly.

These chains are represented by chain 5B1A.G which is 100% sequence identical.

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Entity #8 | Chains H,U

Description: CYTOCHROME C OXIDASE protein | Length: 85

No structure alignment results are available for 1OCR.H, 1OCR.U explicitly.

These chains are represented by chain 5B1A.H which is 100% sequence identical.

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Entity #9 | Chains I,V

Description: CYTOCHROME C OXIDASE protein | Length: 73

No structure alignment results are available for 1OCR.I, 1OCR.V explicitly.

These chains are represented by chain 5B1A.I which is 100% sequence identical.

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References