Structural Similarities for the Entities in PDB 1O9K

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: RETINOBLASTOMA-ASSOCIATED PROTEIN protein | Length: 218

No structure alignment results are available for 1O9K.A, 1O9K.C, 1O9K.E, 1O9K.G explicitly.

These chains are represented by chain 1GUX.a which is 100% sequence identical.

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View how chain 1O9K.G compares with the representative chain d1guxa_. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: RETINOBLASTOMA-ASSOCIATED PROTEIN protein | Length: 152

No structure alignment results are available for 1O9K.B, 1O9K.D, 1O9K.F, 1O9K.H explicitly.

These chains are represented by chain 1GUX.b which is 100% sequence identical.

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View how chain 1O9K.H compares with the representative chain d1guxb_. Select a comparison method:


Entity #3 | Chains P,Q,R,S

Description: TRANSCRIPTION FACTOR E2F1 protein | Length: 18

This entity is too short to be considered for the all vs. all structure alignments.


References