Structural Similarities for the Entities in PDB 1O1D

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G,J,M,P

Description: SKELETAL MUSCLE MYOSIN II protein | Length: 840

No structure alignment results are available for 1O1D.A, 1O1D.D, 1O1D.G, 1O1D.J, 1O1D.M, 1O1D.P explicitly.

These chains are represented by chain 5I0H.A which has more than 40% sequence identity.

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Entity #2 | Chains B,E,H,K,N,Q

Description: SKELETAL MUSCLE MYOSIN II REGULATORY LIGHT CHAIN protein | Length: 145

No structure alignment results are available for 1O1D.B, 1O1D.E, 1O1D.H, 1O1D.K, 1O1D.N, 1O1D.Q explicitly.

These chains are represented by chain 1EXR.a which has more than 40% sequence identity.

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Entity #3 | Chains C,F,I,L,O,R

Description: SKELETAL MUSCLE MYOSIN II ESSENTIAL LIGHT CHAIN protein | Length: 147

No structure alignment results are available for 1O1D.C, 1O1D.F, 1O1D.I, 1O1D.L, 1O1D.O, 1O1D.R explicitly.

These chains are represented by chain 1EXR.a which has more than 40% sequence identity.

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Entity #4 | Chains 0,1,2,3,4,5,7,8,9,V,W,X,Y,Z

Description: SKELETAL MUSCLE ACTIN protein | Length: 375

No structure alignment results are available for 1O1D.0, 1O1D.1, 1O1D.2, 1O1D.3, 1O1D.4, 1O1D.5, 1O1D.7, 1O1D.8, 1O1D.9, 1O1D.V, 1O1D.W, 1O1D.X, 1O1D.Y, 1O1D.Z explicitly.

These chains are represented by chain 4CBU.A which has more than 70% sequence identity.

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References