Structural Similarities for the Entities in PDB 1NWY

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 0

Description: 23S RIBOSOMAL RRNA rna | Length: 2880

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains H

Description: ribosomal protein L13 protein | Length: 174

No structure alignment results are available for 1NWY.H explicitly.

It is represented by chain 4IOA.G which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1NWY.H compares with the representative chain PDP:4IOAGa. Select a comparison method:


Entity #11 | Chains I

Description: ribosomal protein L14 protein | Length: 134

No structure alignment results are available for 1NWY.I explicitly.

It is represented by chain 1WHI.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.I compares with the representative chain d1whia_. Select a comparison method:


Entity #12 | Chains J

Description: ribosomal protein L15 protein | Length: 156

No structure alignment results are available for 1NWY.J explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.J compares with the representative chain xxxx. Select a comparison method:


Entity #13 | Chains K

Description: ribosomal protein L16 protein | Length: 141

No structure alignment results are available for 1NWY.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.K compares with the representative chain xxxx. Select a comparison method:


Entity #14 | Chains L

Description: ribosomal protein L17 protein | Length: 116

No structure alignment results are available for 1NWY.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.L compares with the representative chain xxxx. Select a comparison method:


Entity #15 | Chains M

Description: ribosomal protein L18 protein | Length: 113

No structure alignment results are available for 1NWY.M explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.M compares with the representative chain xxxx. Select a comparison method:


Entity #16 | Chains N

Description: ribosomal protein L19 protein | Length: 166

No structure alignment results are available for 1NWY.N explicitly.

It is represented by chain 4IOA.M which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1NWY.N compares with the representative chain PDP:4IOAMa. Select a comparison method:


Entity #17 | Chains O

Description: ribosomal protein L20 protein | Length: 118

No structure alignment results are available for 1NWY.O explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.O compares with the representative chain xxxx. Select a comparison method:


Entity #18 | Chains P

Description: ribosomal protein L21 protein | Length: 100

No structure alignment results are available for 1NWY.P explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.P compares with the representative chain xxxx. Select a comparison method:


Entity #19 | Chains Q

Description: ribosomal protein L22 protein | Length: 134

No structure alignment results are available for 1NWY.Q explicitly.

It is represented by chain 4IOA.P which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1NWY.Q compares with the representative chain PDP:4IOAPa. Select a comparison method:


Entity #2 | Chains 9

Description: 5S RIBOSOMAL RRNA rna | Length: 124

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains R

Description: ribosomal protein L23 protein | Length: 94

No structure alignment results are available for 1NWY.R explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.R compares with the representative chain xxxx. Select a comparison method:


Entity #21 | Chains S

Description: ribosomal protein L24 protein | Length: 115

No structure alignment results are available for 1NWY.S explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.S compares with the representative chain xxxx. Select a comparison method:


Entity #22 | Chains T

Description: general stress protein Ctc protein | Length: 237

No structure alignment results are available for 1NWY.T explicitly.

It is represented by chain 4IOA.S which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1NWY.T compares with the representative chain PDP:4IOASa. Select a comparison method:


Entity #23 | Chains U

Description: ribosomal protein L27 protein | Length: 91

No structure alignment results are available for 1NWY.U explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.U compares with the representative chain xxxx. Select a comparison method:


Entity #24 | Chains W

Description: ribosomal protein L29 protein | Length: 67

No structure alignment results are available for 1NWY.W explicitly.

It is represented by chain 4IOA.V which is 100% sequence identical.

Show structure comparison results

  Loading...

View how chain 1NWY.W compares with the representative chain PDP:4IOAVa. Select a comparison method:


Entity #25 | Chains X

Description: ribosomal protein L30 protein | Length: 55

No structure alignment results are available for 1NWY.X explicitly.

It is represented by chain 1BXY.a which has more than 30% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.X compares with the representative chain d1bxya_. Select a comparison method:


Entity #26 | Chains Y

Description: ribosomal protein L31 protein | Length: 73

No structure alignment results are available for 1NWY.Y explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.Y compares with the representative chain xxxx. Select a comparison method:


Entity #27 | Chains Z

Description: ribosomal protein L32 protein | Length: 59

No structure alignment results are available for 1NWY.Z explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.Z compares with the representative chain xxxx. Select a comparison method:


Entity #28 | Chains 1

Description: ribosomal protein L33 protein | Length: 55

No structure alignment results are available for 1NWY.1 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.1 compares with the representative chain xxxx. Select a comparison method:


Entity #29 | Chains 2

Description: ribosomal protein L34 protein | Length: 47

No structure alignment results are available for 1NWY.2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.2 compares with the representative chain xxxx. Select a comparison method:


Entity #3 | Chains A

Description: ribosomal protein L2 protein | Length: 274

No structure alignment results are available for 1NWY.A explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.A compares with the representative chain xxxx. Select a comparison method:


Entity #30 | Chains 3

Description: ribosomal protein L35 protein | Length: 65

No structure alignment results are available for 1NWY.3 explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.3 compares with the representative chain xxxx. Select a comparison method:


Entity #31 | Chains 4

Description: ribosomal protein L36 protein | Length: 37

No structure alignment results are available for 1NWY.4 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.4 compares with the representative chain xxxx. Select a comparison method:


Entity #4 | Chains B

Description: ribosomal protein L3 protein | Length: 211

No structure alignment results are available for 1NWY.B explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.B compares with the representative chain xxxx. Select a comparison method:


Entity #5 | Chains C

Description: ribosomal protein L4 protein | Length: 204

No structure alignment results are available for 1NWY.C explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.C compares with the representative chain xxxx. Select a comparison method:


Entity #6 | Chains D

Description: ribosomal protein L5 protein | Length: 180

No structure alignment results are available for 1NWY.D explicitly.

It is represented by chain 1IQ4.a which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.D compares with the representative chain d1iq4a_. Select a comparison method:


Entity #7 | Chains E

Description: ribosomal protein L6 protein | Length: 185

No structure alignment results are available for 1NWY.E explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.E compares with the representative chain xxxx. Select a comparison method:


Entity #8 | Chains F

Description: ribosomal protein L9 protein | Length: 146

No structure alignment results are available for 1NWY.F explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.F compares with the representative chain xxxx. Select a comparison method:


Entity #9 | Chains G

Description: ribosomal protein L11 protein | Length: 144

No structure alignment results are available for 1NWY.G explicitly.

It is represented by chain 3EGV.b which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NWY.G compares with the representative chain d3egvb1. Select a comparison method:


References