Structural Similarities for the Entities in PDB 1NVM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G

Description: 4-hydroxy-2-oxovalerate aldolase protein | Length: 345

No structure alignment results are available for 1NVM.A, 1NVM.C, 1NVM.E, 1NVM.G explicitly.

These chains are represented by chain 4LRT.A which has more than 50% sequence identity.

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View how chain 1NVM.G compares with the representative chain PDP:4LRTAa. Select a comparison method:


Entity #2 | Chains B,D,F,H

Description: acetaldehyde dehydrogenase (acylating) protein | Length: 312

No structure alignment results are available for 1NVM.B, 1NVM.D, 1NVM.F, 1NVM.H explicitly.

These chains are represented by chain 4LRT.B which has more than 50% sequence identity.

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View how chain 1NVM.H compares with the representative chain PDP:4LRTBa. Select a comparison method:


References