Structural Similarities for the Entities in PDB 1NTM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Ubiquinol-cytochrome C reductase complex core protein I, mitochondrial protein | Length: 446

No structure alignment results are available for 1NTM.A explicitly.

It is represented by chain 2A06.a which is 100% sequence identical.

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Entity #10 | Chains J

Description: Ubiquinol-cytochrome C reductase complex 7.2 kDa protein protein | Length: 62

No structure alignment results are available for 1NTM.J explicitly.

It is represented by chain 2A06.J which is 100% sequence identical.

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Entity #11 | Chains K

Description: Ubiquinol-cytochrome C reductase complex 6.4 kDa protein protein | Length: 56

No structure alignment results are available for 1NTM.K explicitly.

It is represented by chain 2FYU.k which has more than 95% sequence identity.

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Entity #2 | Chains B

Description: Ubiquinol-cytochrome C reductase complex core protein 2, mitochondrial protein | Length: 439

No structure alignment results are available for 1NTM.B explicitly.

It is represented by chain 2A06.b which is 100% sequence identical.

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Entity #3 | Chains C

Description: Cytochrome b protein | Length: 379

No structure alignment results are available for 1NTM.C explicitly.

It is represented by chain 3CX5.c which has more than 50% sequence identity.

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Entity #4 | Chains D

Description: cytochrome c1 protein | Length: 241

No structure alignment results are available for 1NTM.D explicitly.

It is represented by chain 3CX5.d which has more than 50% sequence identity.

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Entity #5 | Chains E

Description: UBIQUINOL-CYTOCHROME C REDUCTASE IRON-SULFUR SUBUNIT, mitochondrial protein | Length: 196

No structure alignment results are available for 1NTM.E explicitly.

It is represented by chain 3CX5.e which has more than 50% sequence identity.

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Entity #6 | Chains F

Description: Ubiquinol-cytochrome C reductase complex 14 kDa protein protein | Length: 110

No structure alignment results are available for 1NTM.F explicitly.

It is represented by chain 2A06.f which is 100% sequence identical.

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Entity #7 | Chains G

Description: Ubiquinol-cytochrome C reductase complex ubiquinone-binding protein QP-C protein | Length: 81

No structure alignment results are available for 1NTM.G explicitly.

It is represented by chain 2A06.g which is 100% sequence identical.

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Entity #8 | Chains H

Description: Ubiquinol-cytochrome C reductase complex 11 kDa protein protein | Length: 78

No structure alignment results are available for 1NTM.H explicitly.

It is represented by chain 2A06.h which is 100% sequence identical.

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Entity #9 | Chains I

Description: Ubiquinol-cytochrome C reductase 8 kDa protein protein | Length: 57

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References