Structural Similarities for the Entities in PDB 1NM5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B

Description: NAD(P) transhydrogenase subunit alpha part 1 protein | Length: 384

No structure alignment results are available for 1NM5.A, 1NM5.B explicitly.

These chains are represented by chain 4IZH.A which has more than 40% sequence identity.

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View how chain 1NM5.B compares with the representative chain PDP:4IZHAa. Select a comparison method:


Entity #2 | Chains C

Description: NAD(P) transhydrogenase subunit beta protein | Length: 203

No structure alignment results are available for 1NM5.C explicitly.

It is represented by chain 1DJL.a which has more than 40% sequence identity.

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View how chain 1NM5.C compares with the representative chain d1djla_. Select a comparison method:


References