Structural Similarities for the Entities in PDB 1NKK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-25-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D

Description: Capsid protein P40 protein | Length: 256

No structure alignment results are available for 1NKK.A, 1NKK.B, 1NKK.C, 1NKK.D explicitly.

These chains are represented by chain 1WPO.a which has more than 95% sequence identity.

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View how chain 1NKK.D compares with the representative chain d1wpoa_. Select a comparison method:

Entity #2 | Chains E,F,G,H

Description: Peptidomimetic inhibitor protein | Length: 6

This entity is too short to be considered for the all vs. all structure alignments.