1NJM

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM) and the antibiotic sparsomycin


Structural Similarities for the Entities in PDB 1NJM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 0

Description: 23S ribosomal RNA rna | Length: 2880

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains 5

Description: tRNA acceptor stem mimic rna | Length: 35

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains K

Description: 50S ribosomal protein L16 protein | Length: 141

No structure alignment results are available for 1NJM.K explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #4 | Chains T

Description: GENERAL STRESS PROTEIN CTC protein | Length: 237

No structure alignment results are available for 1NJM.T explicitly.

It is represented by chain 4IOA.S which is 100% sequence identical.

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References