Structural Similarities for the Entities in PDB 1NH3

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains B

Description: 5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*UP*(UBB))-3' dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains C

Description: 5'-D(*(GNG)P*GP*AP*AP*AP*AP*AP*UP*UP*UP*UP*T)-3' dna | Length: 12

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains D

Description: 5'-D(*AP*AP*AP*AP*AP*TP*UP*UP*UP*UP*CP*(CAR)P*AP*AP*GP*UP*CP*UP*UP*UP*UP*T)-3' hybrid | Length: 22

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A

Description: DNA topoisomerase I protein | Length: 563

No structure alignment results are available for 1NH3.A explicitly.

It is represented by chain 1K4T.a which is 100% sequence identical.

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View how chain 1NH3.A compares with the representative chain d1k4ta1. Select a comparison method:


References