Structural Similarities for the Entities in PDB 1NFK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-18-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,D

Description: DNA (5'-D(*TP*GP*GP*GP*AP*AP*TP*TP*CP*CP*C)-3') dna | Length: 11

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B

Description: PROTEIN (NUCLEAR FACTOR KAPPA-B (NF-KB)) protein | Length: 325

No structure alignment results are available for 1NFK.A, 1NFK.B explicitly.

These chains are represented by chain 1A3Q.a which has more than 50% sequence identity.

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View how chain 1NFK.B compares with the representative chain d1a3qa1. Select a comparison method: