Structural Similarities for the Entities in PDB 1NFD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: N15 ALPHA-BETA T-CELL RECEPTOR protein | Length: 203

No structure alignment results are available for 1NFD.A, 1NFD.C explicitly.

These chains are represented by chain 4UDT.A which has more than 50% sequence identity.

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View how chain 1NFD.C compares with the representative chain PDP:4UDTAa. Select a comparison method:


Entity #2 | Chains B,D

Description: N15 ALPHA-BETA T-CELL RECEPTOR protein | Length: 239

No structure alignment results are available for 1NFD.B, 1NFD.D explicitly.

These chains are represented by chain 4UDT.B which has more than 70% sequence identity.

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View how chain 1NFD.D compares with the representative chain PDP:4UDTBa. Select a comparison method:


Entity #3 | Chains E,G

Description: H57 FAB protein | Length: 212

No structure alignment results are available for 1NFD.E, 1NFD.G explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1NFD.G compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #4 | Chains F,H

Description: H57 FAB protein | Length: 222

No structure alignment results are available for 1NFD.F, 1NFD.H explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1NFD.H compares with the representative chain PDP:4NZULa. Select a comparison method:


References