Structural Similarities for the Entities in PDB 1NEN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Succinate dehydrogenase flavoprotein subunit protein | Length: 588

No structure alignment results are available for 1NEN.A explicitly.

It is represented by chain 2WDQ.A which is 100% sequence identical.

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View how chain 1NEN.A compares with the representative chain PDP:2WDQAa. Select a comparison method:


Entity #2 | Chains B

Description: Succinate dehydrogenase iron-sulfur protein protein | Length: 238

No structure alignment results are available for 1NEN.B explicitly.

It is represented by chain 2H88.B which has more than 50% sequence identity.

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View how chain 1NEN.B compares with the representative chain PDP:2H88Ba. Select a comparison method:


Entity #3 | Chains C

Description: Succinate dehydrogenase cytochrome b-556 subunit protein | Length: 129

No structure alignment results are available for 1NEN.C explicitly.

It is represented by chain 2WDQ.C which is 100% sequence identical.

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View how chain 1NEN.C compares with the representative chain PDP:2WDQCa. Select a comparison method:


Entity #4 | Chains D

Description: Succinate dehydrogenase hydrophobic membrane anchor protein protein | Length: 115

No structure alignment results are available for 1NEN.D explicitly.

It is represented by chain 2WDQ.D which is 100% sequence identical.

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View how chain 1NEN.D compares with the representative chain PDP:2WDQDa. Select a comparison method:


References