Structural Similarities for the Entities in PDB 1NDO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E

Description: NAPHTHALENE 1,2-DIOXYGENASE protein | Length: 449

No structure alignment results are available for 1NDO.A, 1NDO.C, 1NDO.E explicitly.

These chains are represented by chain 2BMO.a which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NDO.E compares with the representative chain d2bmoa1. Select a comparison method:


Entity #2 | Chains B,D,F

Description: NAPHTHALENE 1,2-DIOXYGENASE protein | Length: 194

No structure alignment results are available for 1NDO.B, 1NDO.D, 1NDO.F explicitly.

These chains are represented by chain 2BMO.b which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NDO.F compares with the representative chain d2bmob1. Select a comparison method:


References