Structural Similarities for the Entities in PDB 1NCR

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: coat protein VP1 protein | Length: 285

No structure alignment results are available for 1NCR.A explicitly.

It is represented by chain 4Q4W.1 which has more than 40% sequence identity.

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View how chain 1NCR.A compares with the representative chain PDP:4Q4W1a. Select a comparison method:


Entity #2 | Chains B

Description: coat protein VP2 protein | Length: 261

No structure alignment results are available for 1NCR.B explicitly.

It is represented by chain 4Q4W.2 which has more than 50% sequence identity.

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Entity #3 | Chains C

Description: coat protein VP3 protein | Length: 238

No structure alignment results are available for 1NCR.C explicitly.

It is represented by chain 4Q4W.3 which has more than 50% sequence identity.

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Entity #4 | Chains D

Description: coat protein VP4 protein | Length: 68

No structure alignment results are available for 1NCR.D explicitly.

It is represented by chain 4Q4W.4 which has more than 50% sequence identity.

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View how chain 1NCR.D compares with the representative chain PDP:4Q4W4_. Select a comparison method:


References