Structural Similarities for the Entities in PDB 1NCQ

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: COAT PROTEIN VP1 protein | Length: 289

No structure alignment results are available for 1NCQ.A explicitly.

It is represented by chain 4Q4W.1 which has more than 40% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NCQ.A compares with the representative chain PDP:4Q4W1a. Select a comparison method:


Entity #2 | Chains B

Description: COAT PROTEIN VP2 protein | Length: 262

No structure alignment results are available for 1NCQ.B explicitly.

It is represented by chain 4Q4W.2 which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NCQ.B compares with the representative chain PDP:4Q4W2a. Select a comparison method:


Entity #3 | Chains C

Description: COAT PROTEIN VP3 protein | Length: 236

No structure alignment results are available for 1NCQ.C explicitly.

It is represented by chain 4Q4W.3 which has more than 50% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NCQ.C compares with the representative chain PDP:4Q4W3a. Select a comparison method:


Entity #4 | Chains D

Description: COAT PROTEIN VP4 protein | Length: 68

No structure alignment results are available for 1NCQ.D explicitly.

It is represented by chain 4Q4W.4 which has more than 70% sequence identity.

Show structure comparison results

  Loading...

View how chain 1NCQ.D compares with the representative chain PDP:4Q4W4_. Select a comparison method:


References