Structural Similarities for the Entities in PDB 1NAK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains L,M

Description: Fab 83.1 - light chain protein | Length: 219

No structure alignment results are available for 1NAK.L, 1NAK.M explicitly.

These chains are represented by chain 4NZU.L which has more than 70% sequence identity.

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View how chain 1NAK.M compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #2 | Chains H,I

Description: Fab 83.1 - heavy chain protein | Length: 214

No structure alignment results are available for 1NAK.H, 1NAK.I explicitly.

These chains are represented by chain 4NZU.L which has more than 50% sequence identity.

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View how chain 1NAK.I compares with the representative chain PDP:4NZULa. Select a comparison method:


Entity #3 | Chains P,Q

Description: Peptide MP1 protein | Length: 16

This entity is too short to be considered for the all vs. all structure alignments.


References