Structural Similarities for the Entities in PDB 1N86

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Fibrin alpha/alpha-E chain protein | Length: 87

No structure alignment results are available for 1N86.A, 1N86.D explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B,E

Description: Fibrin beta chain protein | Length: 328

No structure alignment results are available for 1N86.B, 1N86.E explicitly.

These chains are represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #3 | Chains C,F

Description: Fibrin gamma chain protein | Length: 324

No structure alignment results are available for 1N86.C, 1N86.F explicitly.

These chains are represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains G,H

Description: fibrin alpha chain peptide ligand fragment Gly-Pro-Arg protein | Length: 3

This entity is too short to be considered for the all vs. all structure alignments.


Entity #5 | Chains I,J

Description: fibrin beta chain peptide ligand fragment Gly-His-Arg-Pro-Leu-Asp-Lys protein | Length: 7

This entity is too short to be considered for the all vs. all structure alignments.


References