Structural Similarities for the Entities in PDB 1N73

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-20-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Fibrin alpha-1 chain protein | Length: 119

No structure alignment results are available for 1N73.A, 1N73.D explicitly.

These chains are represented by chain 1LWU.a which is 100% sequence identical.

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View how chain 1N73.D compares with the representative chain d1lwua_. Select a comparison method:


Entity #2 | Chains B,E

Description: Fibrin beta chain protein | Length: 323

No structure alignment results are available for 1N73.B, 1N73.E explicitly.

These chains are represented by chain 3E1I.B which has more than 50% sequence identity.

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View how chain 1N73.E compares with the representative chain PDP:3E1IBa. Select a comparison method:


Entity #3 | Chains C,F

Description: Fibrin gamma chain protein | Length: 330

No structure alignment results are available for 1N73.C, 1N73.F explicitly.

These chains are represented by chain 3E1I.C which has more than 50% sequence identity.

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View how chain 1N73.F compares with the representative chain PDP:3E1ICa. Select a comparison method:


Entity #4 | Chains G,H,I,J

Description: peptide ligand: Gly-his-Arg-Pro-amide protein | Length: 4

This entity is too short to be considered for the all vs. all structure alignments.


References