Structural Similarities for the Entities in PDB 1N5W

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D

Description: Carbon monoxide dehydrogenase small chain protein | Length: 166

No structure alignment results are available for 1N5W.A, 1N5W.D explicitly.

These chains are represented by chain 1N62.a which is 100% sequence identical.

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View how chain 1N5W.D compares with the representative chain d1n62a1. Select a comparison method:


Entity #2 | Chains B,E

Description: Carbon monoxide dehydrogenase large chain protein | Length: 809

No structure alignment results are available for 1N5W.B, 1N5W.E explicitly.

These chains are represented by chain 1N62.b which is 100% sequence identical.

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Entity #3 | Chains C,F

Description: Carbon monoxide dehydrogenase medium chain protein | Length: 288

No structure alignment results are available for 1N5W.C, 1N5W.F explicitly.

These chains are represented by chain 1N62.c which is 100% sequence identical.

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View how chain 1N5W.F compares with the representative chain d1n62c1. Select a comparison method:


References