Structural Similarities for the Entities in PDB 1N4Q

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C,E,G,I,K

Description: Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha protein | Length: 377

No structure alignment results are available for 1N4Q.A, 1N4Q.C, 1N4Q.E, 1N4Q.G, 1N4Q.I, 1N4Q.K explicitly.

These chains are represented by chain 2H6F.a which has more than 90% sequence identity.

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View how chain 1N4Q.K compares with the representative chain d2h6fa1. Select a comparison method:


Entity #2 | Chains B,D,F,H,J,L

Description: Geranylgeranyl transferase type-1 subunit beta protein | Length: 377

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Entity #3 | Chains M,N,O,P,Q,R

Description: Fusion protein consisting of transforming protein p21b and Ras related protein Rap-2b protein | Length: 11

This entity is too short to be considered for the all vs. all structure alignments.


References