Structural Similarities for the Entities in PDB 1N3F

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,E,I,K

Description: 5'-D(*CP*GP*AP*AP*AP*CP*TP*GP*TP*CP*TP*CP*GP*A)-3' dna | Length: 14

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D,F,J,L

Description: 5'-D(P*GP*AP*CP*AP*GP*TP*TP*TP*CP*G-3') dna | Length: 10

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A,B,G,H

Description: DNA endonuclease I-CreI protein | Length: 163

No structure alignment results are available for 1N3F.A, 1N3F.B, 1N3F.G, 1N3F.H explicitly.

These chains are represented by chain 1T9I.a which has more than 95% sequence identity.

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View how chain 1N3F.H compares with the representative chain d1t9ia_. Select a comparison method:


References