Structural Similarities for the Entities in PDB 1MWA

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,C

Description: 2C T CELL RECEPTOR ALPHA CHAIN protein | Length: 202

No structure alignment results are available for 1MWA.A, 1MWA.C explicitly.

These chains are represented by chain 4UDT.A which has more than 50% sequence identity.

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View how chain 1MWA.C compares with the representative chain PDP:4UDTAa. Select a comparison method:


Entity #2 | Chains B,D

Description: 2C T CELL RECEPTOR BETA CHAIN protein | Length: 237

No structure alignment results are available for 1MWA.B, 1MWA.D explicitly.

These chains are represented by chain 4UDT.B which has more than 70% sequence identity.

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View how chain 1MWA.D compares with the representative chain PDP:4UDTBa. Select a comparison method:


Entity #3 | Chains H,I

Description: H-2KBM3 MHC CLASS I MOLECULE HEAVY CHAIN protein | Length: 275

No structure alignment results are available for 1MWA.H, 1MWA.I explicitly.

These chains are represented by chain 1K5N.a which has more than 70% sequence identity.

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View how chain 1MWA.I compares with the representative chain d1k5na1. Select a comparison method:


Entity #4 | Chains L,M

Description: MICROGLOBULIN MHC LIGHT CHAIN protein | Length: 99

No structure alignment results are available for 1MWA.L, 1MWA.M explicitly.

These chains are represented by chain 1K5N.b which has more than 50% sequence identity.

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View how chain 1MWA.M compares with the representative chain d1k5nb_. Select a comparison method:


Entity #5 | Chains P,Q

Description: DEV8 protein | Length: 8

This entity is too short to be considered for the all vs. all structure alignments.


References