Structural Similarities for the Entities in PDB 1MQN

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,D,G

Description: Hemagglutinin HA1 chain protein | Length: 329

No structure alignment results are available for 1MQN.A, 1MQN.D, 1MQN.G explicitly.

These chains are represented by chain 3KU3.A which has more than 40% sequence identity.

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View how chain 1MQN.G compares with the representative chain PDP:3KU3Aa. Select a comparison method:


Entity #2 | Chains B,E,H

Description: Hemagglutinin HA2 chain protein | Length: 221

No structure alignment results are available for 1MQN.B, 1MQN.E, 1MQN.H explicitly.

These chains are represented by chain 1MQM.b which is 100% sequence identical.

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View how chain 1MQN.H compares with the representative chain d1mqmb_. Select a comparison method:


References