Structural Similarities for the Entities in PDB 1MMO

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains B,C

Description: METHANE MONOOXYGENASE HYDROLASE (BETA CHAIN) protein | Length: 384

No structure alignment results are available for 1MMO.B, 1MMO.C explicitly.

These chains are represented by chain 1MTY.b which has more than 95% sequence identity.

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View how chain 1MMO.C compares with the representative chain d1mtyb_. Select a comparison method:


Entity #2 | Chains D,E

Description: METHANE MONOOXYGENASE HYDROLASE (ALPHA CHAIN) protein | Length: 512

No structure alignment results are available for 1MMO.D, 1MMO.E explicitly.

These chains are represented by chain 1MTY.d which is 100% sequence identical.

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Entity #3 | Chains G,H

Description: METHANE MONOOXYGENASE HYDROLASE (GAMMA CHAIN) protein | Length: 162

No structure alignment results are available for 1MMO.G, 1MMO.H explicitly.

These chains are represented by chain 1MTY.g which is 100% sequence identical.

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View how chain 1MMO.H compares with the representative chain d1mtyg_. Select a comparison method:


References