Structural Similarities for the Entities in PDB 1ML5

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

Info & Help Documentation



A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: 30S 16S RIBOSOMAL RNA rna | Length: 1522

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #10 | Chains H

Description: 30S RIBOSOMAL PROTEIN S5 protein | Length: 162

No structure alignment results are available for 1ML5.H explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #11 | Chains I

Description: 30S RIBOSOMAL PROTEIN S6 protein | Length: 101

No structure alignment results are available for 1ML5.I explicitly.

It is represented by chain 1CQM.a which has more than 95% sequence identity.

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Entity #12 | Chains J

Description: 30S RIBOSOMAL PROTEIN S7 protein | Length: 156

No structure alignment results are available for 1ML5.J explicitly.

It is represented by chain 1RSS.a which is 100% sequence identical.

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Entity #13 | Chains K

Description: 30S RIBOSOMAL PROTEIN S8 protein | Length: 138

No structure alignment results are available for 1ML5.K explicitly.

It is represented by chain 1SEI.a which has more than 50% sequence identity.

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Entity #14 | Chains L

Description: 30S RIBOSOMAL PROTEIN S9 protein | Length: 128

No structure alignment results are available for 1ML5.L explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #15 | Chains M

Description: 30S RIBOSOMAL PROTEIN S10 protein | Length: 105

No structure alignment results are available for 1ML5.M explicitly.

It is represented by chain 3D3B.J which has more than 50% sequence identity.

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Entity #16 | Chains N

Description: 30S RIBOSOMAL PROTEIN S11 protein | Length: 129

No structure alignment results are available for 1ML5.N explicitly.

It is represented by chain 4CVN.E which has more than 40% sequence identity.

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Entity #17 | Chains O

Description: 30S RIBOSOMAL PROTEIN S12 protein | Length: 135

No structure alignment results are available for 1ML5.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #18 | Chains P

Description: 30S RIBOSOMAL PROTEIN S13 protein | Length: 126

No structure alignment results are available for 1ML5.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #19 | Chains Q

Description: 30S RIBOSOMAL PROTEIN S14 protein | Length: 61

No structure alignment results are available for 1ML5.Q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #2 | Chains B

Description: T-RNA(PHE) rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #20 | Chains R

Description: 30S RIBOSOMAL PROTEIN S15 protein | Length: 89

No structure alignment results are available for 1ML5.R explicitly.

It is represented by chain 4A5U.B which has more than 50% sequence identity.

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Entity #21 | Chains S

Description: 30S RIBOSOMAL PROTEIN S16 protein | Length: 91

No structure alignment results are available for 1ML5.S explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #22 | Chains T

Description: 30S RIBOSOMAL PROTEIN S17 protein | Length: 105

No structure alignment results are available for 1ML5.T explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #23 | Chains U

Description: 30S RIBOSOMAL PROTEIN S18 protein | Length: 88

No structure alignment results are available for 1ML5.U explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #24 | Chains V

Description: 30S RIBOSOMAL PROTEIN S19 protein | Length: 93

No structure alignment results are available for 1ML5.V explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #25 | Chains W

Description: 30S RIBOSOMAL PROTEIN S20 protein | Length: 106

No structure alignment results are available for 1ML5.W explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #26 | Chains X

Description: 30S RIBOSOMAL PROTEIN THX protein | Length: 26

No structure alignment results are available for 1ML5.X explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #27 | Chains c

Description: 50S RIBOSOMAL PROTEIN L1 protein | Length: 228

No structure alignment results are available for 1ML5.c explicitly.

It is represented by chain 4REO.A which has more than 95% sequence identity.

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Entity #28 | Chains d

Description: 50S RIBOSOMAL PROTEIN L2 protein | Length: 178

No structure alignment results are available for 1ML5.d explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #29 | Chains e

Description: 50S RIBOSOMAL PROTEIN L3 protein | Length: 338

No structure alignment results are available for 1ML5.e explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #3 | Chains C

Description: A- AND P-SITE MESSENGER RNA CODONS rna | Length: 6

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #30 | Chains f

Description: 50S RIBOSOMAL PROTEIN L4 protein | Length: 246

No structure alignment results are available for 1ML5.f explicitly.

It is represented by chain XXXX.null which has more than 95% sequence identity.

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Entity #31 | Chains g

Description: 50S RIBOSOMAL PROTEIN L5 protein | Length: 176

No structure alignment results are available for 1ML5.g explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #32 | Chains h

Description: 50S RIBOSOMAL PROTEIN L6 protein | Length: 177

No structure alignment results are available for 1ML5.h explicitly.

It is represented by chain XXXX.null which has more than 40% sequence identity.

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Entity #33 | Chains l

Description: 50S RIBOSOMAL PROTEIN L11 protein | Length: 141

No structure alignment results are available for 1ML5.l explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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Entity #34 | Chains m

Description: 50S RIBOSOMAL PROTEIN L13 protein | Length: 145

No structure alignment results are available for 1ML5.m explicitly.

It is represented by chain 1J3A.a which has more than 40% sequence identity.

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Entity #35 | Chains n

Description: 50S RIBOSOMAL PROTEIN L14 protein | Length: 122

No structure alignment results are available for 1ML5.n explicitly.

It is represented by chain 1WHI.a which is 100% sequence identical.

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Entity #36 | Chains o

Description: 50S RIBOSOMAL PROTEIN L15 protein | Length: 164

No structure alignment results are available for 1ML5.o explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #37 | Chains p

Description: 50S RIBOSOMAL PROTEIN L16 protein | Length: 138

No structure alignment results are available for 1ML5.p explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #38 | Chains q

Description: 50S RIBOSOMAL PROTEIN L18 protein | Length: 186

No structure alignment results are available for 1ML5.q explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #39 | Chains r

Description: 50S RIBOSOMAL PROTEIN L19 protein | Length: 66

No structure alignment results are available for 1ML5.r explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #4 | Chains a

Description: 50S 23S RIBOSOMAL RNA rna | Length: 2916

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #40 | Chains s

Description: 50S RIBOSOMAL PROTEIN L22 protein | Length: 113

No structure alignment results are available for 1ML5.s explicitly.

It is represented by chain 1I4J.a which has more than 95% sequence identity.

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Entity #41 | Chains t

Description: 50S RIBOSOMAL PROTEIN L23 protein | Length: 84

No structure alignment results are available for 1ML5.t explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #42 | Chains u

Description: 50S RIBOSOMAL PROTEIN L24 protein | Length: 119

No structure alignment results are available for 1ML5.u explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #43 | Chains v

Description: 50S RIBOSOMAL PROTEIN L25 protein | Length: 94

No structure alignment results are available for 1ML5.v explicitly.

It is represented by chain 1DFU.p which is 100% sequence identical.

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Entity #44 | Chains w

Description: 50S RIBOSOMAL PROTEIN L29 protein | Length: 70

No structure alignment results are available for 1ML5.w explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #45 | Chains x

Description: 50S RIBOSOMAL PROTEIN L30 protein | Length: 60

No structure alignment results are available for 1ML5.x explicitly.

It is represented by chain 1BXY.a which is 100% sequence identical.

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Entity #5 | Chains b

Description: 50S 5S RIBOSOMAL RNA rna | Length: 123

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #6 | Chains Z

Description: Peptide chain release factor 2 protein | Length: 365

No structure alignment results are available for 1ML5.Z explicitly.

It is represented by chain 1GQE.a which has more than 95% sequence identity.

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Entity #7 | Chains E

Description: 30S RIBOSOMAL PROTEIN S2 protein | Length: 256

No structure alignment results are available for 1ML5.E explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #8 | Chains F

Description: 30S RIBOSOMAL PROTEIN S3 protein | Length: 239

No structure alignment results are available for 1ML5.F explicitly.

It is represented by chain XXXX.null which is 100% sequence identical.

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Entity #9 | Chains G

Description: 30S RIBOSOMAL PROTEIN S4 protein | Length: 209

No structure alignment results are available for 1ML5.G explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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References