Structural Similarities for the Entities in PDB 1MKD

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Mar-28-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,B,C,D,E,F,G,H,I,J,K,L

Description: Phosphodiesterase 4D protein | Length: 328

No structure alignment results are available for 1MKD.A, 1MKD.B, 1MKD.C, 1MKD.D, 1MKD.E, 1MKD.F, 1MKD.G, 1MKD.H, 1MKD.I, 1MKD.J, 1MKD.K, 1MKD.L explicitly.

These chains are represented by chain 1Y2K.a which has more than 95% sequence identity.

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View how chain 1MKD.L compares with the representative chain d1y2ka1. Select a comparison method: