Structural Similarities for the Entities in PDB 1MJ2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jan-10-2017

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains F,G

Description: DNA (5'-D(*TP*TP*AP*GP*AP*CP*GP*TP*CP*TP*AP*GP*AP*CP*GP*TP*CP*TP*A)-3') dna | Length: 19

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.

Entity #2 | Chains A,B,C,D

Description: PROTEIN (METHIONINE REPRESSOR) protein | Length: 104

No structure alignment results are available for 1MJ2.A, 1MJ2.B, 1MJ2.C, 1MJ2.D explicitly.

These chains are represented by chain 1CMC.a which has more than 95% sequence identity.

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View how chain 1MJ2.D compares with the representative chain d1cmca_. Select a comparison method: