Structural Similarities for the Entities in PDB 1MJ1

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Feb-14-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C,D

Description: Phe-tRNA rna | Length: 76

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains Q

Description: sarcin-ricin loop of 23SrRNA rna | Length: 41

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains R

Description: helix 69 of 23S rRNA rna | Length: 27

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #4 | Chains A

Description: Elongation Factor Tu protein | Length: 405

No structure alignment results are available for 1MJ1.A explicitly.

It is represented by chain 2C78.a which has more than 90% sequence identity.

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Entity #5 | Chains O

Description: S12 ribosomal protein protein | Length: 135

No structure alignment results are available for 1MJ1.O explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #6 | Chains P

Description: S13 ribosomal protein protein | Length: 126

No structure alignment results are available for 1MJ1.P explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #7 | Chains L

Description: L11 ribosomal protein protein | Length: 141

No structure alignment results are available for 1MJ1.L explicitly.

It is represented by chain 3EGV.b which has more than 50% sequence identity.

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References