Structural Similarities for the Entities in PDB 1MHP

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains A,B

Description: integrin alpha 1, (RESIDUES 169-360) protein | Length: 192

No structure alignment results are available for 1MHP.A, 1MHP.B explicitly.

These chains are represented by chain 5HGJ.A which has more than 95% sequence identity.

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Entity #2 | Chains H,X

Description: Fab fragment, heavy chain protein | Length: 219

No structure alignment results are available for 1MHP.H, 1MHP.X explicitly.

These chains are represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #3 | Chains L,Y

Description: FAB FRAGMENT, light chain protein | Length: 212

No structure alignment results are available for 1MHP.L, 1MHP.Y explicitly.

These chains are represented by chain XXXX.null which has more than 70% sequence identity.

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References