Structural Similarities for the Entities in PDB 1MG2

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A,E,I,M

Description: Methylamine dehydrogenase, heavy chain protein | Length: 390

No structure alignment results are available for 1MG2.A, 1MG2.E, 1MG2.I, 1MG2.M explicitly.

These chains are represented by chain 3SJL.D which has more than 95% sequence identity.

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View how chain 1MG2.M compares with the representative chain PDP:3SJLDa. Select a comparison method:


Entity #2 | Chains B,F,J,N

Description: Methylamine dehydrogenase, light chain protein | Length: 131

No structure alignment results are available for 1MG2.B, 1MG2.F, 1MG2.J, 1MG2.N explicitly.

These chains are represented by chain 2OIZ.D which has more than 40% sequence identity.

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Entity #3 | Chains C,G,K,O

Description: Amicyanin protein | Length: 105

No structure alignment results are available for 1MG2.C, 1MG2.G, 1MG2.K, 1MG2.O explicitly.

These chains are represented by chain 2OV0.a which is 100% sequence identical.

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Entity #4 | Chains D,H,L,P

Description: CYTOCHROME C-L protein | Length: 155

No structure alignment results are available for 1MG2.D, 1MG2.H, 1MG2.L, 1MG2.P explicitly.

These chains are represented by chain 2GC7.d which is 100% sequence identical.

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References