Structure-based design of potent and selective inhibitors of phospholipase A2: Crystal structure of the complex formed between phosholipase A2 from Naja Naja sagittifera and a designed peptide inhibitor at 1.9 A resolution

Structural Similarities for the Entities in PDB 1MF4

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Oct-18-2016

Info & Help Documentation

A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: Phospholipase A2 protein | Length: 119

No structure alignment results are available for 1MF4.A explicitly.

It is represented by chain 1MC2.a which has more than 40% sequence identity.

Show structure comparison results


View how chain 1MF4.A compares with the representative chain d1mc2a_. Select a comparison method:

Entity #2 | Chains B

Description: VAL-ALA-PHE-ARG-SER protein | Length: 5

This entity is too short to be considered for the all vs. all structure alignments.