Structural Similarities for the Entities in PDB 1MEC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains 1

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 274

No structure alignment results are available for 1MEC.1 explicitly.

It is represented by chain 5CFC.A which has more than 50% sequence identity.

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View how chain 1MEC.1 compares with the representative chain PDP:5CFCAa. Select a comparison method:


Entity #2 | Chains 2

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein | Length: 256

No structure alignment results are available for 1MEC.2 explicitly.

It is represented by chain 5CFC.C which has more than 70% sequence identity.

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View how chain 1MEC.2 compares with the representative chain PDP:5CFCCa. Select a comparison method:


Entity #3 | Chains 3

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 231

No structure alignment results are available for 1MEC.3 explicitly.

It is represented by chain 1QQP.3 which has more than 40% sequence identity.

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View how chain 1MEC.3 compares with the representative chain d1qqp3_. Select a comparison method:


Entity #4 | Chains 4

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 70

No structure alignment results are available for 1MEC.4 explicitly.

It is represented by chain 2MEV.. which is 100% sequence identical.

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