1MEC

CONFORMATIONAL VARIABILITY OF A PICORNAVIRUS CAPSID: PH-DEPENDENT STRUCTURAL CHANGES OF MENGO VIRUS RELATED TO ITS HOST RECEPTOR ATTACHMENT SITE AND DISASSEMBLY


Structural Similarities for the Entities in PDB 1MEC

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Sep-27-2017

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A detailed description of the procedure for the all vs. all alignments is available.

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Entity #1 | Chains 1

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 274

No structure alignment results are available for 1MEC.1 explicitly.

It is represented by chain XXXX.null which has more than 50% sequence identity.

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Entity #2 | Chains 2

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP2) protein | Length: 256

No structure alignment results are available for 1MEC.2 explicitly.

It is represented by chain XXXX.null which has more than 70% sequence identity.

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Entity #3 | Chains 3

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 231

No structure alignment results are available for 1MEC.3 explicitly.

It is represented by chain 1QQP.3 which has more than 40% sequence identity.

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Entity #4 | Chains 4

Description: MENGO VIRUS COAT PROTEIN (SUBUNIT VP1) protein | Length: 70

No structure alignment results are available for 1MEC.4 explicitly.

It is represented by chain 2MEV.. which is 100% sequence identical.

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