Structural Similarities for the Entities in PDB 1MDM

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Jun-13-2017

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains C

Description: PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #2 | Chains D

Description: PAX5/ETS BINDING SITE ON THE MB-1 PROMOTER dna | Length: 26

This entity is NOT a polypeptide entity and therefore cannot be considered for the all vs. all structure alignments.


Entity #3 | Chains A

Description: PAIRED BOX PROTEIN PAX-5 protein | Length: 149

No structure alignment results are available for 1MDM.A explicitly.

It is represented by chain 1K78.a which is 100% sequence identical.

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View how chain 1MDM.A compares with the representative chain d1k78a1. Select a comparison method:


Entity #4 | Chains B

Description: C-ETS-1 PROTEIN protein | Length: 161

No structure alignment results are available for 1MDM.B explicitly.

It is represented by chain 1GVJ.a which is 100% sequence identical.

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View how chain 1MDM.B compares with the representative chain d1gvja_. Select a comparison method:


References