1MDK

HIGH RESOLUTION SOLUTION NMR STRUCTURE OF MIXED DISULFIDE INTERMEDIATE BETWEEN HUMAN THIOREDOXIN (C35A, C62A, C69A, C73A) MUTANT AND A 13 RESIDUE PEPTIDE COMPRISING ITS TARGET SITE IN HUMAN NFKB (RESIDUES 56-68 OF THE P50 SUBUNIT OF NFKB)


Structural Similarities for the Entities in PDB 1MDK

The following structural similarities have been found using the jFATCAT-rigid algorithm [1,2].

To reduce the number of hits, a 40% sequence identity clustering has been applied and a representative chain taken from each cluster. If the representative chain consists of multiple domains, each domain is included in the search. If available, the SCOP 1.75 domain assignment [3] is used. Otherwise algorithmic domain assignments are computed using the ProteinDomainParser [4].

Currently viewing only significant results (P-value < 0.001). Show all available results.

Cluster data are up-to-date as of: Nov-29-2016

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A detailed description of the procedure for the all vs. all alignments is available.

Entity #1 | Chains A

Description: THIOREDOXIN protein | Length: 105

No structure alignment results are available for 1MDK.A explicitly.

It is represented by chain 4OO4.A which has more than 95% sequence identity.

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View how chain 1MDK.A compares with the representative chain PDP:4OO4Aa. Select a comparison method:


Entity #2 | Chains B

Description: TARGET SITE IN HUMAN NFKB protein | Length: 13

This entity is too short to be considered for the all vs. all structure alignments.


References